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Scientists studying infections used to focus mainly on the direct interaction of the immune system with pathogens, but have since moved on to look more closely at the interactions that go on between microbiota, immune system and pathogen. Using mouse models, researchers from the Helmholtz Centre for Infection Research (HZI) recently elucidated a relationship between gut microbiomes of various compositions and the susceptibility to Salmonella infections. In their study, the scientists from Braunschweig identified several bacterial families that have a protective effect against Salmonella. The researchers also elucidated the immune mechanism in the mucosa of the gut that is regulated by the protective bacterial families. Published in Cell Host & Microbe, the results of the study of the HZI scientists are an important step towards a better understanding of the interactions of the triad of microbiota, immune system and pathogen.