Prof. Dr. Dietmar Pieper

Mühlen S., Heroven A.K., Elxnat B., Kahl S., Pieper D.H., Dersch P. (2024)

Infection and antibiotic-associated changes in the fecal microbiota of C. rodentium f

Antimicrob.Agents Chemother.

DOI: 10.1128/aac.00057-24 HZI-Repositorium PubMed

Deng Z.L., Pieper D.H., Stallmach A., Steube A., Vital M., ... , Reck M., Wagner-Döbler I. (2023)

Engraftment of essential functions through multiple fecal microbiota transplants in chronic antibiotic-resistant pouchitis -

Microbiome, 11 (1)

DOI: 10.1186/s40168-023-01713-9 HZI-Repositorium PubMed

Oberste M., Böse B.E., Dos Anjos Borges L.G., Junca H., Plumeier I., Kahl S., Simon F., Beule A.G., ... , Rudack C., Pieper D.H. (2023)

Effects of squamous cell carcinoma and smoking status on oropharyngeal and laryngeal microbial communities

Head Neck

DOI: 10.1002/hed.2756 HZI-Repositorium PubMed

Grobe B., Wellhöner F., Klein F., Chhatwal P., Vital M., Pieper D.H., Voigtländer T., Lenzen H., Wedemeyer H., ... , Solbach P., Heidrich B. (2023)

Next Generation Sequencing Outperforms Cultivation-Based Methods for Detection of Bacterial Genera in Bile After Liver Transplantation

J.Clin.Exp.Hepatol.

DOI: 10.1016/j.jceh.2023.08.001

Helbich S., Barrantes I., Dos Anjos Borges L.G., Pieper D.H., Vainshtein Y., ... , Sohn K., Engesser K.H. (2023)

The 2-methylpropene degradation pathway in Mycobacteriaceae family strains

Environ.Microbiol.

DOI: 10.1111/1462-2920.16449 HZI-Repositorium

Kaune T., Griesmann H., Theuerkorn K., H+ñmmerle M., Laumen H., Krug S., Plumeier I., Kahl S., Junca H., Gustavo dos Anjos Borges L., Michl P., ... , Pieper D.H., Rosendahl J. (2023)

Gender-specific changes of the gut microbiome correlate with tumor development in murine models of pancreatic cancer

iScience, 26 (6)

DOI: 10.1016/j.isci.2023.106841 HZI-Repositorium

Hassan H.A., d'Enza M., Armengaud J., Pieper D.H. (2023)

Correction to: Biochemical and genetic characterization comparison of four extradiol dioxygenases in Rhizorhabdus wittichii RW1 (Applied Microbiology and Biotechnology, (2022), 106, 17, (5539-5550), 10.1007/s00253-022-12099-3)

Applied Microbiology and Biotechnology

DOI: 10.1007/s00253-023-12516-1 HZI-Repositorium PubMed

Dos Anjos Borges L.G., Pastuschek J., Heimann Y., Dawczynski K., Bergner M., Haase R., Stubert J., Olbertz D., Plumeier I., Kahl S., Heroven A.K., Schleußner E., Pieper D.H., ... , Zöllkau J., PEONS study group (2023)

Vaginal and neonatal microbiota in pregnant women with preterm premature rupture of membranes and consecutive early onset neonatal sepsis

BMC Med., 21 (1)

DOI: 10.1186/s12916-023-02805-x HZI-Repositorium PubMed

Arce-Rodriguez A., Libby E, Castellón E, Avendano R, Cambronero J.C, Vargas M, Pieper D.H, Bertilsson S, ... , Chavarría M, Puente-Sánchez F (2023)

Out of the blue: the independent activity of sulfur-oxidizers and diatoms mediate the sudden color shift of a tropical river

Environmental Microbiomes, 18 (1)

DOI: 10.1186/s40793-023-00464-2 HZI-Repositorium PubMed

Amils R., Escudero C., Oggerin M., Puente Sánchez F., Arce Rodríguez A., Fernández Remolar D., Rodríguez N., García Villadangos M., Sanz J.L., Briones C., Sanchez M., Gómez F., Leandro T., Moreno-Paz M., Prieto-Ballesteros O., Molina A., Tornos F., Sánchez-Andrea I., Timmis K., ... , Pieper D.H., Parro V. (2022)

Coupled C, H, N, S and Fe biogeochemical cycles operating in the continental deep subsurface of the Iberian Pyrite Belt

Environ.Microbiol.

DOI: 10.1111/1462-2920.16291 HZI-Repositorium PubMed

Octaviana S., Primahana G., Mozef T., Borges L.G.A., Pieper D.H., Wink J. (2022)

Diversity of Myxobacteria Isolated from Indonesian Mangroves and Their Potential for New Antimicrobial Sources

Curr.Microbiol., 80 (1)

DOI: 10.1007/s00284-022-03066-2 HZI-Repositorium PubMed

Hassan H.A., Enza D., Armengaud J., Pieper D.H. (2022)

Biochemical and genetic characterization comparison of four extradiol dioxygenases in Rhizorhabdus wittichii RW1

Appl.Microbiol.Biotechnol., 106 (17)

DOI: 10.1007/s00253-022-12099-3 HZI-Repositorium PubMed

Junca H., Pieper D.H. (2022)

Hundreds of Novel DNA Viruses From a Single Healthy Patient: Biomarker Potential for Colorectal Cancer

Gastroenterology, 163 (3)

DOI: 10.1053/j.gastro.2022.06.075 HZI-Repositorium PubMed

Stallmach A., Grunert P., Stallhofer J., Löffler B., Baier M., Rödel J., Kiehntopf M., Neugebauer S., Pieper D.H., Junca H., Tannapfel A., Merkel U., Schumacher U., Breternitz-Gruhne M., Heller T., Schauer A., ... , Hartmann M., Steube A. (2022)

Transfer of FRozen Encapsulated multi-donor Stool filtrate for active ulcerative Colitis (FRESCO): study protocol for a prospective, multicenter, double-blind, randomized, controlled trial

Trials, 23 (1)

DOI: 10.1186/s13063-022-06095-1 HZI-Repositorium PubMed

Klein F., Wellhöner F., Plumeier I., Kahl S., Chhatwal P., Vital M., Voigtländer T., Pieper D.H., Manns M.P., Lenzen H., ... , Solbach P., Heidrich B. (2022)

The biliary microbiome in ischaemic-type biliary lesions can be shaped by stenting but is resilient to antibiotic treatment

Liver Int.

DOI: 10.1111/liv.15194 HZI-Repositorium PubMed

Junca H., Pieper D.H., Medina E. (2022)

The emerging potential of microbiome transplantation on human health interventions

Comput.Struct.Biotechnol.J., 20 (January 2022)

DOI: 10.1016/j.csbj.2022.01.009 HZI-Repositorium PubMed

Rath S., Rox K., Kleine Bardenhorst S., Schminke U., Dörr M., Mayerle J., Frost F., Lerch M.M., Karch A., Brönstrup M., ... , Pieper D.H., Vital M. (2021)

Higher Trimethylamine-N-Oxide Plasma Levels with Increasing Age Are Mediated by Diet and Trimethylamine-Forming Bacteria

mSystems.

DOI: 10.1128/mSystems.00945-21 HZI-Repositorium PubMed

Graf A.C., Striesow J., Pane-Farre J., Sura T., Wurster M., Lalk M., Pieper D.H., Becher D., ... , Kahl B.C., Riedel K. (2021)

An Innovative Protocol for Metaproteomic Analyses of Microbial Pathogens in Cystic Fibrosis Sputum

Front Cell Infect.Microbiol., 11

DOI: 10.3389/fcimb.2021.724569 HZI-Repositorium PubMed

Schütte K., Schulz C., Vilchez-Vargas R., Vasapolli R., Palm F., Simon B., Schomburg D., Lux A., Geffers R., Pieper D.H., ... , Link A., Malfertheiner P. (2021)

Impact of healthy aging on active bacterial assemblages throughout the gastrointestinal tract

Gut Microbes, 13 (1)

DOI: 10.1080/19490976.2021.1966261 HZI-Repositorium PubMed

Rox K., Rath S., Pieper D.H., Vital M., Brönstrup M. (2021)

A simplified LC-MS/MS method for the quantification of the cardiovascular disease biomarker trimethylamine-N-oxide and its precursors

J.Pharmaceut.Analy.

DOI: 10.1016/j.jpha.2021.03.007 HZI-Repositorium

Kopfnagel V., Dreyer S., Zeitvogel J., Pieper D.H., Buch A., Sodeik B., Rademacher F., ... , Harder J., Werfel T. (2021)

Free human DNA attenuates the activity of antimicrobial peptides in atopic dermatitis

Allergy

DOI: 10.1111/all.14992 HZI-Repositorium PubMed

Hübner I., Shapiro J.A., Hoßmann J., Drechsel J., Hacker S.M., Rather P.N., Pieper D.H., ... , Wuest W.M., Sieber S.A. (2021)

Broad spectrum antibiotic xanthocillin X effectively kills Acinetobacter baumannii via dysregulation of heme biosynthesis

ACS Cent.Sci.

DOI: 10.1021/acscentsci.0c01621 HZI-Repositorium

Wellhöner F., Döscher N., Woelfl F., Vital M., Plumeier I., Kahl S., Potthoff A., Manns M.P., Pieper D.H., Cornberg M., ... , Wedemeyer H., Heidrich B. (2021)

Eradication of chronic HCV infection: improvement of dysbiosis only in patients without liver cirrhosis

Hepatology, 74 (1)

DOI: 10.1002/hep.31700 HZI-Repositorium PubMed

Rojas-Gätjens D., Arce-Rodríguez A., Puente-Sánchez F., Avendano R., Libby E., Mora-Amador R., Rojas-Jimenez K., Fuentes-Schweizer P., ... , Pieper D.H., Chavarría M (2021)

Temperature and elemental sulfur shape microbial communities in two extremely acidic aquatic volcanic environments

Extremophiles., 25 (1)

DOI: 10.1007/s00792-020-01213-w HZI-Repositorium PubMed

Zöllkau J., Pieper D.H., Pastuschek J., Makarewicz O., Mentzel H.J., ... , Dawczynski K., Schleußner E. (2020)

Lethal Neonatal Respiratory Failure by Perinatal Transmission of Ureaplasma Parvum after Maternal PPROM

Z.Geburtshilfe Neonatol.

DOI: 10.1055/a-1326-2719 HZI-Repositorium PubMed

Arce-Rodriguez A., Puente-Sánchez F., Avendano R., Libby E., Mora-Amador R., Rojas-Jimenez K., Martinez M., ... , Pieper D.H., Chavarria M. (2020)

Microbial Community Structure Along a Horizontal Oxygen Gradient in a Costa Rican Volcanic Influenced Acid Rock Drainage System

Microb.Ecol., 80 (4)

DOI: 10.1007/s00248-020-01530-9 HZI-Repositorium PubMed

Espinosa M.J.C., Blanco A.C., Schmidgall T., Atanasoff-Kardjalieff A.K., Kappelmeyer U., Tischler D., Pieper D.H., ... , Heipieper H.J., Eberlein C. (2020)

Toward Biorecycling: Isolation of a Soil Bacterium That Grows on a Polyurethane Oligomer and Monomer

Front Microbiol., 11

DOI: 10.3389/fmicb.2020.00404 HZI-Repositorium PubMed

Smoczek M., Vital M., Wedekind D., Basic M., Zschemisch N.H., Pieper D.H., Siebert A., ... , Bleich A., Buettner M. (2020)

A combination of genetics and microbiota influences the severity of the obesity phenotype in diet-induced obesity

Sci.Rep., 10 (1)

DOI: 10.1038/s41598-020-63340-w HZI-Repositorium PubMed

Korsch M., Marten S.M., Walther W., Vital M., Pieper D.H., Dötsch A. (2018)

Impact of dental cement on the peri-implant biofilm-microbial comparison of two different cements in an in vivo observational study

Clin.Implant Dent.Relat.Res., 20 (5)

DOI: 10.1111/cid.12650 HZI-Repositorium PubMed

Rath S., Rud T., Pieper D.H., Vital M. (2020)

Potential TMA-Producing Bacteria Are Ubiquitously Found in Mammalia

Front.Microbiol., 10

DOI: 10.3389/fmicb.2019.02966 HZI-Repositorium PubMed

Le P., Kunold E., Macsics R., Rox K., Jennings M.C., Ugur I., Reinecke M., Chaves-Moreno D., Hackl M.W., Fetzer C., Mandl F.A.M., Lehmann J., Korotkov V.S., Hacker S.M., Kuster B., Antes I., Pieper D.H., Rohde M., Wuest W.M., ... , Medina E., Sieber S.A. (2020)

Repurposing human kinase inhibitors to create an antibiotic active against drug-resistant Staphylococcus aureus, persisters and biofilms

Nat.Chem., 12 (2)

DOI: 10.1038/s41557-019-0378-7 HZI-Repositorium PubMed

Nitz H., Duarte M., Jauregui R., Pieper D.H., Müller J.A., Kästner M. (2020)

Identification of benzene-degrading Proteobacteria in a constructed wetland by employing in situ microcosms and RNA-stable isotope probing

Appl.Microbiol.Biotechnol., 104 (4)

DOI: 10.1007/s00253-019-10323-1 HZI-Repositorium PubMed

Treffon J., Chaves-Moreno D., Niemann S., Pieper D.H., Vogl T., ... , Roth J., Kahl B.C. (2020)

Importance of superoxide dismutase A and M for protection of Staphylococcus aureus in the oxidative stressful environment of cystic fibrosis airways

Cell Microbiol., 22 (5)

DOI: 10.1111/cmi.13158 HZI-Repositorium PubMed

Siemens N., Oehmcke-Hecht S., Hossmann J., Skorka S.B., Nijhuis R.H.T., Ruppen C., Skrede S., Rohde M., Schultz D., Lalk M., Itzek A., Pieper D.H., van den Bout C.J., Claas E.C.J., Kuijper E.J., Mauritz R., Sendi P., ... , Wunderink H.F., Norrby-Teglund A. (2020)

Prothrombotic and Proinflammatory Activities of the b[beta]-Hemolytic Group B Streptococcal Pigment

J.Innate.Immun., 12 (4)

DOI: 10.1159/000504002 HZI-Repositorium PubMed

Herzog S., Dach F., de Buhr N., Niemann S., Schlagowski J., Chaves-Moreno D., Neumann C., Goretzko J., Schwierzeck V., Mellmann A., Dübbers A., Küster P., Schültingkemper H., Rescher U., Pieper D.H., ... , Von Köckritz-Blickwede M., Kahl B.C. (2019)

High Nuclease Activity of Long Persisting Staphylococcus aureus Isolates Within the Airways of Cystic Fibrosis Patients Protects Against NET-Mediated Killing

Front Immunol., 10

DOI: 10.3389/fimmu.2019.02552 HZI-Repositorium PubMed

Duysburgh C., Ossieur W.P., Paepe K., Van den Abbeele P., Vichez-Vargas R., Vital M., Pieper D.H., Van De Wiele T., ... , Hesta M., Possemiers S. (2020)

Development and validation of the Simulator of the Canine Intestinal Microbial Ecosystem (SCIMETM)

J.Anim Sci., 98 (1)

DOI: 10.1093/jas/skz357 HZI-Repositorium PubMed

Milici M., Vital M., Tomasch J., Badewien T.H., Giebel H.A., Plumeier I., Wang H., Pieper D.H., ... , Wagner-Döbler I., Simon M. (2017)

Diversity and community composition of particle-associated and free-living bacteria in mesopelagic and bathypelagic Southern Ocean water masses: Evidence of dispersal limitation in the Bransfield Strait

Limnol.Oceanogr., 62 (3)

DOI: 10.1002/lno.10487 HZI-Repositorium

Vital M., Rud T., Rath S., Pieper D.H., Schlüter D. (2019)

Diversity of Bacteria Exhibiting Bile Acid-inducible 7a[alpha]-dehydroxylation Genes in the Human Gut

Comput.Struct.Biotechnol.J., 17

DOI: 10.1016/j.csbj.2019.07.012 HZI-Repositorium PubMed

Thänert R., Itzek A., Hossmann J., Hamisch D., Madsen M.B., Hyldegaard O., Skrede S., Bruun T., Norrby-Teglund A., ... , Medina E., Pieper D.H. (2019)

Molecular profiling of tissue biopsies reveals unique signatures associated with streptococcal necrotizing soft tissue infections

Nat.Commun., 10 (1)

DOI: 10.1038/s41467-019-11722-8 HZI-Repositorium PubMed

Gottschick C., Raupach-Rosin H., Langer S., Hassan L., Horn J., Dorendorf E., Caputo M., Bittner M., Beier L., Rübsamen N., Schlinkmann K., Zoch B., Guzmán C.A., Hansen G., Heselich V., Holzapfel E., Hübner J., Pietschmann T., Pieper D.H., Pletz M., Riese P., Schmidt-Pokrzywniak A., Hartwig S., Von Kaisenberg C., Aydogdu M., Buhles M., Dressler F., Eberl W., Haase R., von Koch F.E., Feidicker S., Frambach T., Franz H.G.B., Guthmann F., Koch H.G., Seeger S., Oberhoff C., Pauker W., Petry K.U., Schild R.L., Tchirikov M., Röhrig E., ... , Karch A., Mikolajczyk R. (2019)

Erratum: Cohort profile: The LoewenKIDS Study - Life-course perspective on infections, the microbiome and the development of the immune system in early childhood (International Journal of Epidemiology (2019) DOI: 10.1093/ije/dyz001)

Int.J.Epidemiol., 48 (4)

DOI: 10.1093/ije/dyz069 PubMed

Wellhöner F., Döscher N., Tergast T.L., Vital M., Plumeier I., Kahl S., Potthoff A., Manns M.P., Maasoumy B., Wedemeyer H., Cornberg M., ... , Pieper D.H., Heidrich B. (2019)

The impact of proton pump inhibitors on the intestinal microbiota in chronic hepatitis C patients

Scand.J.Gastroenterol., 54 (8)

DOI: 10.1080/00365521.2019.1647280 PubMed

Conrads G., Wendt L.K., Hetrodt F., Deng Z.L., Pieper D., Abdelbary M.M.H., Barg A., ... , Wagner-Döbler I., Apel C. (2019)

Deep sequencing of biofilm microbiomes on dental composite materials

J.Oral Microbiol., 11 (1)

DOI: 10.1080/20002297.2019.1617013 HZI-Repositorium PubMed

Vasapolli R., Schutte K., Schulz C., Vital M., Schomburg D., Pieper D.H., ... , Vilchez-Vargas R., Malfertheiner P. (2019)

Analysis of Transcriptionally Active Bacteria Throughout the Gastrointestinal Tract of Healthy Individuals

Gastroenterology, 157 (4)

DOI: 10.1053/j.gastro.2019.05.068 PubMed

Babbar A., Barrantes I., Pieper D.H., Itzek A. (2019)

Superantigen SpeA attenuates the biofilm forming capacity of Streptococcus pyogenes

J.Microbiol., 57

DOI: 10.1007/s12275-019-8648-z PubMed

Steube A., Vital M., Grunert P., Pieper D.H., Stallmach A. (2019)

Long-term Multidonor Fecal Microbiota Transfer (FMT) by Oral Capsules for Active Ulcerative Colitis

J.Crohns.Colitis., 13 (11)

DOI: 10.1093/ecco-jcc/jjz073 HZI-Repositorium PubMed

Stallmach A., Grunert P., Pieper D., Steube A. (2019)

[Ulcerative colitis: Does the modulation of gut microbiota induce long-lasting remission?] Colitis ulcerosa: Kann eine Modulation der intestinalen Mikrobiota eine langfristige Remission bedingen?

Z.Gastroenterol., 57 (7)

DOI: 10.1055/a-0874-6603 PubMed

Bruesch I., Meier P., Vital M., Pieper D.H., Selke K., Böhlen S., Basic M., Meier M., Glage S., Hundrieser J., Wedekind D., ... , Buettner M., Bleich A. (2019)

Analysis of Cdcs1 colitogenic effects in the hematopoietic compartment reveals distinct microbiome interaction and a new subcongenic interval active in T cells

Mucosal Immunol., 12 (3)

DOI: 10.1038/s41385-019-0133-9 PubMed

Gottschick C., Raupach-Rosin H., Langer S., Hassan L., Horn J., Dorendorf E., Caputo M., Bittner M., Beier L., Rübsamen N., Schlinkmann K., Zoch B., Guzmán C.A., Hansen G., Heselich V., Holzapfel E., Hübner J., Pietschmann T., Pieper D.H., Pletz M., Riese P., Schmidt-Pokrzywniak A., Hartwig S., von Kaisenberg C., Aydogdu M., Buhles M., Dressler F., Eberl W., Haase R., Edler von Koch F., Feidicker S., Frambach T., Franz H.G.B., Guthmann F., Koch H.G., Seeger S., Oberhoff C., Pauker W., Petry K.U., Schild R.L., Tchirikov M., ... , Röhrig E., Mikolajczyk R. (2019)

Cohort profile: The LoewenKIDS Study - life-course perspective on infections, the microbiome and the development of the immune system in early childhood

Int.J.Epidemiol., 48 (4)

DOI: 10.1093/ije/dyz001 HZI-Repositorium PubMed

Schipke J., Vital M., Schnapper-Isl A., Pieper D.H., Mühlfeld C. (2019)

Spermidine and Voluntary Activity Exert Differential Effects on Sucrose- Compared with Fat-Induced Systemic Changes in Male Mice

J.Nutr., 149 (3)

DOI: 10.1093/jn/nxy272 PubMed

Caputo M., Zoch-Lesniak B., Karch A., Vital M., Meyer F., Klawonn F., Baillot A., ... , Pieper D.H., Mikolajczyk R.T. (2019)

Bacterial community structure and effects of picornavirus infection on the anterior nares microbiome in early childhood

BMC.Microbiol., 19 (1)

DOI: 10.1186/s12866-018-1372-8 HZI-Repositorium PubMed

Arce-Rodríguez A., Puente-Sánchez F., Avendaño R., Martínez-Cruz M., Moor J.M., ... , Pieper D.H., Chavarría M. (2019)

Thermoplasmatales and sulfur-oxidizing bacteria dominate the microbial community at the surface water of a CO2-rich hydrothermal spring located in Tenorio Volcano National Park, Costa Rica

Extremophiles, 23 (2)

DOI: 10.1007/s00792-018-01072-6 HZI-Repositorium PubMed

Piwosz K., Shabarova T., Tomasch J., Simek K., Kopejtka K., Kahl S., ... , Pieper D.H., Koblizek M. (2018)

Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS)

ISME J., 12 (11)

DOI: 10.1038/s41396-018-0213-y HZI-Repositorium PubMed

Villegas-Plazas M., Wos-Oxley M.L., Sanchez J.A., Pieper D.H., Thomas O.P., Junca H. (2019)

Variations in Microbial Diversity and Metabolite Profiles of the Tropical Marine Sponge Xestospongia muta with Season and Depth

Microb.Ecol., 78 (1)

DOI: 10.1007/s00248-018-1285-y HZI-Repositorium PubMed

Rath S., Rud T., Karch A., Pieper D.H., Vital M. (2018)

Pathogenic functions of host microbiota

Microbiome, 6 (1)

DOI: 10.1186/s40168-018-0542-0 HZI-Repositorium PubMed

Strunecky O., Kopejtka K., Goecke F., Tomasch J., Lukavsky J., Neori A., Kahl S., Pieper D.H., Pilarski P., ... , Kaftan D., Koblizek M. (2019)

High diversity of thermophilic cyanobacteria in Rupite hot spring identified by microscopy, cultivation, single-cell PCR and amplicon sequencing

Extremophiles., 23

DOI: 10.1007/s00792-018-1058-z PubMed

Puente-Sánchez F., Arce-Rodríguez A., Oggerin M., Garcia-Villadangos M., Moreno-Paz M., Blanco Y., Rodriguez N., Bird L., Lincoln S.A., Tornos F., Prieto-Ballesteros O., Freeman K.H., Pieper D.H., Timmis K.N., ... , Amils R., Parro V. (2018)

Viable cyanobacteria in the deep continental subsurface

Proc.Natl.Acad.Sci.U.S.A, 115 (42)

DOI: 10.1073/pnas.1808176115 HZI-Repositorium PubMed

Pezoldt J., Pasztoi M., Zou M., Wiechers C., Beckstette M., Thierry G.R., Vafadarnejad E., Floess S., Arampatzi P., Buettner M., Schweer J., Fleissner D., Vital M., Pieper D.H., Basic M., Dersch P., Strowig T., Hornef M., Bleich A., Bode U., Pabst O., Bajenoff M., ... , Saliba A.E., Hühn J. (2018)

Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes

Nat.Commun., 9 (1)

DOI: 10.1038/s41467-018-06423-7 HZI-Repositorium

Vásquez-Pineros M.A., Martínez-Lavanchy P.M., Jehmlich N., Pieper D.H., Rincón C.A., Harms H., ... , Junca H., Heipieper H.J. (2018)

Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation

BMC Microbiol., 18 (1)

DOI: 10.1186/s12866-018-1255-z HZI-Repositorium PubMed

Babbar A., Bruun T., Hyldegaard O., Nekludov M., Arnell P., ... , Pieper D.H., Itzek A. (2018)

Pivotal Role of Preexisting Pathogen-Specific Antibodies in the Development of Necrotizing Soft-Tissue Infections

J.Infect.Dis., 218 (1)

DOI: 10.1093/infdis/jiy110 PubMed

Lopez-Fernandez M., Vilchez-Vargas R., Jroundi F., Boon N., Pieper D., Merroun M.L. (2018)

Microbial community changes induced by uranyl nitrate in bentonite clay microcosms

Appl.Clay Sci., 160

DOI: 10.1016/j.clay.2017.12.034 HZI-Repositorium

Chalermwatanachai T., Vilchez-Vargas R., Holtappels G., Lacoere T., Jáuregui R., Kerckhof F.M., Pieper D.H., Van De Wiele T., Vaneechoutte M., ... , Van Zele T., Bachert C. (2018)

Chronic rhinosinusitis with nasal polyps is characterized by dysbacteriosis of the nasal microbiota

Sci.Rep., 8 (1)

DOI: 10.1038/s41598-018-26327-2 HZI-Repositorium PubMed

Salden B.N., Troost F.J., Wilms E., Truchado P., Vilchez-Vargas R., Pieper D.H., Jáuregui R., Marzorati M., Van De Wiele T., ... , Possemiers S., Masclee A.A. (2018)

Reinforcement of intestinal epithelial barrier by arabinoxylans in overweight and obese subjects: A randomized controlled trial: Arabinoxylans in gut barrier

Clin.Nutr., 37 (2)

DOI: 10.1016/j.clnu.2017.01.024 PubMed

Babbar A., Itzek A., Pieper D.H., Nitsche-Schmitz D.P. (2018)

Detection of Streptococcus pyogenes virulence genes in Streptococcus dysgalactiae subsp. equisimilis from Vellore, India

Folia Microbiol.(Praha), 63 (5)

DOI: 10.1007/s12223-018-0595-2 HZI-Repositorium PubMed

Ehsani E., Hernandez-Sanabria E., Kerckhof F.M., Props R., Vilchez-Vargas R., Vital M., ... , Pieper D.H., Boon N. (2018)

Initial evenness determines diversity and cell density dynamics in synthetic microbial ecosystems

Sci.Rep., 8 (1)

DOI: 10.1038/s41598-017-18668-1 HZI-Repositorium PubMed

Vital M., Karch A., Pieper D.H. (2017)

Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data

mSystems., 2 (6)

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Gottschick C., Deng Z.L., Vital M., Masur C., Abels C., Pieper D.H., Rohde M., ... , Mendling W., Wagner-Döbler I. (2017)

Treatment of biofilms in bacterial vaginosis by an amphoteric tenside pessary-clinical study and microbiota analysis

Microbiome., 5 (1)

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Gottschick C., Deng Z.L., Vital M., Masur C., Abels C., ... , Pieper D.H., Wagner-Döbler I. (2017)

The urinary microbiota of men and women and its changes in women during bacterial vaginosis and antibiotic treatment

Microbiome., 5 (1)

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Salden B.N., Troost F.J., Wilms E., Truchado P., Vilchez-Vargas R., Pieper D.H., Jáuregui R., Marzorati M., Van De Wiele T., ... , Possemiers S., Masclee A.A. (2016)

Reinforcement of intestinal epithelial barrier by arabinoxylans in overweight and obese subjects: A randomized controlled trial. Arabinoxylans in gut barrier

Clin.Nutr.

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Amitay E.L., Werner S., Vital M., Pieper D.H., Hofler D., Gierse I.J., Butt J., Balavarca Y., ... , Cuk K., Brenner H. (2017)

Fusobacterium and colorectal cancer: Causal factor or passenger? Results from a large colorectal cancer screening study

Carcinogenesis, 38 (8)

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Rath S., Heidrich B., Pieper D.H., Vital M. (2017)

Uncovering the trimethylamine-producing bacteria of the human gut microbiota

Microbiome., 5 (1)

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Witte T., Pieper D.H., Heidrich B. (2017)

[Intestinal microbiota in individualized therapies] Die intestinale Mikrobiota als Ansatz für individuelle Therapien

Internist (Berl), 58 (7)

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Heidrich B., Vital M., Plumeier I., Doscher N., Kahl S., Kirschner J., Ziegert S., Solbach P., Lenzen H., Potthoff A., Manns M.P., ... , Wedemeyer H., Pieper D.H. (2017)

Intestinal microbiota in patients with chronic hepatitis C with and without liver cirrhosis compared to healthy controls

Liver Int., 38 (1)

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Babbar A., Nitsche-Schmitz D.P., Pieper D.H., Barrantes I. (2017)

Draft Genome Sequence of Streptococcus dysgalactiae subsp. equisimilis Strain C161L1 Isolated in Vellore, India

Genome Announc., 5 (19)

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Akmatov M.K., Koch N., Vital M., Ahrens W., Flesch-Janys D., Fricke J., Gatzemeier A., Greiser H., Gunther K., Illig T., Kaaks R., Krone B., Kuhn A., Linseisen J., Meisinger C., Michels K., Moebus S., Nieters A., Obi N., Schultze A., Six-Merker J., ... , Pieper D.H., Pessler F. (2017)

Determination of nasal and oropharyngeal microbiomes in a multicenter population-based study - findings from Pretest 1 of the German National Cohort

Sci.Rep., 7 (1)

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Babbar A., Kumar V.N., Bergmann R., Barrantes I., Pieper D.H., ... , Itzek A., Nitsche-Schmitz D.P. (2017)

Members of a new subgroup of Streptococcus anginosus harbor virulence related genes previously observed in Streptococcus pyogenes

Int.J.Med.Microbiol., 307 (3)

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Duarte M., Nielsen A., Camarinha-Silva A., Vilchez-Vargas R., Bruls T., Wos-Oxley M.L., ... , Jauregui R., Pieper D.H. (2017)

Functional soil metagenomics: Elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation

Environ.Microbiol., 19 (8)

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Van den Bossche L., Hindryckx P., Devisscher L., Devriese S., Van Welden S., Holvoet T., Vilchez-Vargas R., Vital M., Pieper D.H., Bussche J.V., Vanhaecke L., Van De Wiele T., ... , De Vos M., Laukens D. (2017)

Ursodeoxycholic acid and its taurine- or glycine-conjugated species reduce colitogenic dysbiosis and equally suppress experimental colitis in mice

Appl.Environ.Microbiol., 83 (7)

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Ruiz A., Cerdó T., Jauregui R., Pieper D.H., Marcos A., Clemente A., Garcia F., Margolles A., Ferrer M., ... , Campoy C., Suárez A. (2017)

One-year calorie restriction impacts gut microbial composition but not its metabolic performance in obese adolescents

Environ.Microbiol., 19 (4)

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Truchado P., Hernandez-Sanabria E., Salden B.N., Van den Abbeele P., Vilchez-Vargas R., Jauregui R., Pieper D.H., ... , Possemiers S., Van De Wiele T. (2017)

Long chain arabinoxylans shift the mucosa-associated microbiota in the proximal colon of the simulator of the human intestinal microbial ecosystem (M-SHIME)

J.Funct.Foods, 32

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Schulz C., Schütte K., Koch N., Vilchez-Vargas R., Wos-Oxley M.L., Oxley A.P., Vital M., ... , Malfertheiner P., Pieper D.H. (2016)

The active bacterial assemblages of the upper GI tract in individuals with and without Helicobacter infection

GUT, 67 (2)

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Arce-Rodríguez A., Puente-Sánchez F., Avendano R., Libby E., Rojas L., Cambronero J.C., Pieper D.H., ... , Timmis K.N., Chavarria M. (2016)

Pristine but metal-rich Rio Sucio (Dirty River) is dominated by Gallionella and other iron-sulfur oxidizing microbes

Extremophiles, 21 (2)

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Korsch M., Marten S.M., Dötsch A., Jauregui R., Pieper D.H., Obst U. (2016)

Effect of dental cements on peri-implant microbial community: comparison of the microbial communities inhabiting the peri-implant tissue when using different luting cements

Clin.Oral Implants Res., 27 (12)

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De Vrieze J., Regueiro L., Props R., Vilchez-Vargas R., Jauregui R., Pieper D.H., ... , Lema J.M., Carballa M. (2016)

Presence does not imply activity: DNA and RNA patterns differ in response to salt perturbation in anaerobic digestion

Biotechnol.Biofuels., 9

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De Weirdt R., Hernandez-Sanabria E., Fievez V., Mees E., Geirnaert A., Van Herreweghen F., Vilchez-Vargas R., Van den Abbeele P., Jauregui R., Pieper D.H., ... , Vlaeminck B., Van de Wiele T. (2016)

Mucosa-associated biohydrogenating microbes protect the simulated colon microbiome from stress associated with high concentrations of poly-unsaturated fat

Environ.Microbiol., 19 (2)

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Van Herreweghen F., Van den Abbeele P., De Mulder T., De Weirdt R., Geirnaert A., Hernandez-Sanabria E., Vilchez-Vargas R., Jauregui R., Pieper D.H., Belzer C., ... , de Vos W.M., Van De Wiele T. (2016)

In vitro colonisation of the distal colon by Akkermansia muciniphila is largely mucin and pH dependent

Benef.Microbes, 8 (1)

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Maes S., Props R., Fitts J.P., Smet R.D., Vilchez-Vargas R., Vital M., Pieper D.H., Vanhaecke F., ... , Boon N., Hennebel T. (2016)

Platinum Recovery from Synthetic Extreme Environments by Halophilic Bacteria

Environ.Sci Technol., 50 (5)

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Puente-Sánchez F., Pieper D.H., Arce-Rodríguez A. (2016)

Draft Genome Sequence of the Deep-Subsurface Actinobacterium Tessaracoccus lapidicaptus IPBSL-7T

Genome Announc., 4 (5)

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Giuliani C., Marzorati M., Innocenti M., Vilchez-Vargas R., Vital M., Pieper D.H., ... , Van de Wiele T., Mulinacci N. (2016)

Dietary supplement based on stilbenes: a focus on gut microbial metabolism by the in vitro simulator M-SHIME(R)

Food Funct., 7 (11)

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Chaves-Moreno D., Wos-Oxley M.L., Jauregui R., Medina E., Oxley A.P., Pieper D.H. (2016)

Exploring the transcriptome of Staphylococcus aureus in its natural niche

Sci Rep., 6

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Ehsani E., Barrantes I., Vandermaesen J., Geffers R., Jarek M., Boon N., Springael D., ... , Pieper D.H., Vilchez-Vargas R. (2016)

Draft Genome Sequence of Aeromonas sp. Strain EERV15

Genome Announc., 4 (4)

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De Vrieze J., Raport L., Roume H., Vilchez-Vargas R., Jáuregui R., ... , Pieper D.H., Boon N. (2016)

The full-scale anaerobic digestion microbiome is represented by specific marker populations

Water Res., 104

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Medina E., Pieper D.H. (2016)

Tackling Threats and Future Problems of Multidrug-Resistant Bacteria

Curr Top.Microbiol.Immunol., 398 (Part 1, chapter 1)

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Kaspar U., Kriegeskorte A., Schubert T., Peters G., Rudack C., Pieper D.H., ... , Wos-Oxley M., Becker K. (2016)

The culturome of the human nose habitats reveals individual bacterial fingerprint patterns

Environ.Microbiol., 18 (7)

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Yakimov M.M., Crisafi F., Messina E., Smedile F., Lopatina A., Denaro R., Pieper D.H., ... , Golyshin P.N., Giuliano L. (2016)

Analysis of defence systems and a conjugative IncP-1 plasmid in the marine polyaromatic hydrocarbons-degrading bacterium Cycloclasticus sp. 78-ME

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Marzorati M., Vilchez-Vargas R., Bussche J.V., Truchado P., Jauregui R., Hage R.A., Pieper D.H., ... , Vanhaecke L., De Wiele T.V. (2016)

High-fiber and high-protein diets shape different gut microbial communities, which ecologically behave similarly under stress conditions, as shown in a gastrointestinal simulator

Mol.Nutr.Food Res, 61 (1)

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Coma M., Vilchez-Vargas R., Roume H., Jauregui R., Pieper D.H., Rabaey K. (2016)

Product Diversity Linked to Substrate Usage in Chain Elongation by Mixed-Culture Fermentation

Environ.Sci.Technol., 50 (12)

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Lunsmann V., Kappelmeyer U., Benndorf R., Martinez-Lavanchy P.M., Taubert A., Adrian L., Duarte M., Pieper D.H., von Bergen M., Muller J.A., ... , Heipieper H.J., Jehmlich N. (2015)

In-situ Protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model

Environ.Microbiol., 18 (4)

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Milici M., Deng Z.L., Tomasch J., Decelle J., Wos-Oxley M.L., Wang H., Jauregui R., Plumeier I., Giebel H.A., Badewien T.H., Wurst M., Pieper D.H., ... , Simon M., Wagner-Döbler I. (2016)

Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton

Front Microbiol., 7

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Wos-Oxley M.L., Chaves-Moreno D., Jauregui R., Oxley A.P., Kaspar U., Plumeier I., Kahl S., Rudack C., ... , Becker K., Pieper D.H. (2016)

Exploring the bacterial assemblages along the human nasal passage

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Milici M., Tomasch J., Wos-Oxley M.L., Decelle J., Jauregui R., Wang H., Deng Z.L., Plumeier I., Giebel H.A., Badewien T.H., Wurst M., Pieper D.H., ... , Simon M., Wagner-Döbler I. (2016)

Bacterioplankton Biogeography of the Atlantic Ocean: A Case Study of the Distance-Decay Relationship

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Meerburg F.A., Vlaeminck S.E., Roume H., Seuntjens D., Pieper D.H., Jauregui R., ... , Vilchez-Vargas R., Boon N. (2016)

High-rate activated sludge communities have a distinctly different structure compared to low-rate sludge communities, and are less sensitive towards environmental and operational variables

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Galvez E.J., Carrillo-Castro K., Zarate L., Guiza L., Pieper D.H., Garcia-Bonilla E., ... , Salazar M., Junca H. (2016)

Draft Genome Sequence of Bacillus licheniformis CG-B52, a Highly Virulent Bacterium of Pacific White Shrimp (Litopenaeus vannamei), Isolated from a Colombian Caribbean Aquaculture Outbreak

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Heidrich B., Steinmann E., Plumeier I., Kirschner J., Sollik L., Ziegert S., Engelmann M., Lehmann P., Manns M.P., ... , Pieper D.H., Wedemeyer H. (2016)

Frequent detection of HCV RNA and HCVcoreAg in stool of patients with chronic hepatitis C

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Stallmach A., Lange K., Buening J., Sina C., Vital M., Pieper D.H. (2016)

Fecal Microbiota Transfer in Patients With Chronic Antibiotic-Refractory Pouchitis

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Courtens E.N., Spieck E., Vilchez-Vargas R., Bode S., Boeckx P., Schouten S., Jauregui R., Pieper D.H., ... , Vlaeminck S.E., Boon N. (2016)

A robust nitrifying community in a bioreactor at 50 degrees C opens up the path for thermophilic nitrogen removal

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Verstraelen H., Vilchez-Vargas R., Desimpel F., Jauregui R., Vankeirsbilck N., Weyers S., Verhelst R., De Sutter P., ... , Pieper D.H., Van de Wiele T. (2016)

Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene

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Lima-Morales D., Jauregui R., Camarinha-Silva A., Geffers R., Pieper D.H., Vilchez-Vargas R. (2016)

Linking microbial community and catabolic gene structures during the adaptation of three contaminated soils under continuous long term pollutant stress

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Courtens E.N.P., Vandekerckhove T., Prat D., Vilchez-Vargas R., Vital M., Pieper D.H., Meerbergen K., Lievens B., ... , Boon N., Vlaeminck S.E. (2016)

Empowering a mesophilic inoculum for thermophilic nitrification: Growth mode and temperature pattern as critical proliferation factors for archaeal ammonia oxidizers

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Grunert O., Hernandez-Sanabria E., Vilchez-Vargas R., Jauregui R., Pieper D.H., Perneel M., Van Labeke M.C., ... , Reheul D., Boon N. (2016)

Mineral and organic growing media have distinct community structure, stability and functionality in soilless culture systems

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Milici M., Tomasch J., Wos-Oxley M.L., Wang H., Jauregui R., Camarinha-Silva A., Deng Z.L., Plumeier I., Giebel H.A., Wurst M., Pieper D.H., ... , Simon M., Wagner-Döbler I. (2016)

Low diversity of planktonic bacteria in the tropical ocean

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Chaves-Moreno D., Wos-Oxley M.L., Jauregui R., Medina E., Oxley A.P., Pieper D.H. (2015)

Application of a Novel "Pan-Genome"-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains

PLoS ONE, 10 (12)

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Ehsani E., Jauregui R., Geffers R., Jarek M., Boon N., ... , Pieper D.H., Vilchez-Vargas R. (2015)

First Draft Genome Sequence of the Acidovorax caeni sp. nov. Type Strain R-24608 (DSM 19327)

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Lopez-Fernandez M., Cherkouk A., Vilchez-Vargas R., Jauregui R., Pieper D., Boon N., ... , Sanchez-Castro I., Merroun M.L. (2015)

Bacterial Diversity in Bentonites, Engineered Barrier for Deep Geological Disposal of Radioactive Wastes

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Burbach K., Seifert J., Pieper D.H., Camarinha-Silva A. (2015)

Evaluation of DNA extraction kits and phylogenetic diversity of the porcine gastrointestinal tract based on Illumina sequencing of two hypervariable regions

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Microbial toluene removal in hypoxic model constructed wetlands occurs predominantly via the ring monooxygenation pathway

Appl.Environ.Microbiol., 81 (18)

de Lima-Morales D., Chaves-Moreno D., Wos-Oxley M.L., Jauregui R., Vilchez-Vargas R., Pieper D.H. (2015)

Degradation of benzene by Pseudomonas veronii 1YdBTEX2 and 1YB2 is catalyzed by enzymes encoded in distinct catabolic gene clusters

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Kümmel S., Herbst F.A., Bahr A., Duarte M., Pieper D.H., Jehmlich N., Seifert J., von Bergen M., Bombach P., ... , Richnow H.H., Vogt C. (2015)

Anaerobic naphthalene degradation by sulfatereducing Desulfobacteraceae from various anoxic aquifers

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Chaves-Moreno D., Plumeier I., Kahl S., Krismer B., Peschel A., Oxley A.P., ... , Jauregui R., Pieper D.H. (2015)

The microbial community structure of the cotton rat nose

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Pérez-Pantoj D., Leiva-Novoa P., Donoso R.A., Little C., Godoy M., ... , Pieper D.H., Gonzáleza B. (2015)

Hierarchy of carbon source utilization in soil bacteria: Hegemonic preference for benzoate in complex aromatic compound mixtures degraded by Cupriavidus pinatubonensis strain JMP134

Appl.Environ.Microbiol., 81 (12)

Ehsani E., Jauregui R., Geffers R., Jareck M., Boon N., ... , Pieper D.H., Vilchez-Vargas R. (2015)

Draft Genome Sequence of Rhodococcus sp. Strain 311R

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Gomez-Silvan C., Vilchez-Vargas R., Arevalo J., Gomez M.A., Gonzalez-Lopez J., ... , Pieper D.H., Rodelas B. (2014)

Quantitative response of nitrifying and denitrifying communities to environmental variables in a full-scale membrane bioreactor

Bioresour.Technol., 169

Lassek C., Burghartz M., Chaves-Moreno D., Otto A., Hentschker C., Fuchs S., Bernhardt J., Jauregui R., Neubauer R., Becher D., Pieper D.H., Jahn M., ... , Jahn D., Riedel K. (2015)

A metaproteomics approach to elucidate host and pathogen protein expression during catheter-associated urinary tract infections (CAUTIs)

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De Vrieze J., Gildemyn S., Vilchez-Vargas R., Jauregui R., Pieper Dietmar H., ... , Verstraete W., Boon N. (2014)

Inoculum selection is crucial to ensure operational stability in anaerobic digestion

Applied Microbiology and Biotechnology, 99

Schulz C., Koch N., Schutte K., Pieper D.H., Malfertheiner P. (2015)

H. pylori and its modulation of gastrointestinal microbiota

J Dig.Dis., 16

Szafranski S.P., Wos-Oxley M.L., Vilchez-Vargas R., Jauregui R., Plumeier I., Klawonn F., Tomasch J., Meisinger C., Kühnisch J., Sztajer H., ... , Pieper D.H., Wagner-Döbler I. (2015)

High-resolution taxonomic profiling of the subgingival microbiome for biomarker discovery and periodontitis diagnosis

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Duarte M., Jauregui R., Vilchez-Vargas R., Junca H., Pieper D.H. (2014)

AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics

Database.(Oxford), 2014

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Szafranska A.K., Oxley A.P.A., Chaves-Moreno D., Horst S.A., Roßlenbroich S., Peters G., Goldmann O., Rohd M., Sinha B., Pieper D.H., Löffler B., Jauregui R., ... , Wos-Oxley M.L., Medina E. (2014)

High-resolution transcriptomic analysis of the adaptive response of staphylococcus aureus during acute and chronic phases of osteomyelitis

MBio, 5 (6)

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Mehraj J., Akmatov M.K., Strömpl J., Gatzemeier A., Layer F., Werner G., Pieper D.H., Medina E., Witte W., ... , Pessler F., Krause G. (2014)

Methicillin-Sensitive and Methicillin-Resistant Staphylococcus aureus Nasal Carriage in a Random Sample of Non-Hospitalized Adult Population in Northern Germany

PLoS ONE, 9 (9)

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Camarinha-Silva A., Jauregui R., Chaves-Moreno D., Oxley A.P.A., Schaumburg F., Becker K., ... , Wos M.L.*, Pieper D.H. (2014)

Comparing the anterior nare bacterial community of two discrete human populations using Illumina amplicon sequencing

Environmental Microbiology, 16 (9)

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Courtens E.N., Vlaeminck S.E., Vilchez-Vargas Ramiro, Verliefde A., Jauregui Ruy, ... , Pieper Dietmar H., Boon N. (2014)

Trade-off between mesophilic and thermophilic denitrification: Rates vs. sludge production, settleability and stability

Water Research, 63C

Kerckhof F.M., Courtens E.N.P., Geirnaert A., Hoefman S., Ho A., Vilchez-Vargas R., Pieper Dietmar H., Jauregui Ruy, Vlaeminck S.E., Van De Wiele T., Vandamme P., ... , Heylen K., Boon N. (2014)

Optimized cryopreservation of mixed microbial communities for conserved functionality and diversity

PLoS ONE, 9 (6)

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Jauregui Ruy, Rodelas B., Geffers Robert, Boon N., Pieper Dietmar H., Vilchez-Vargas Ramiro (2014)

Draft Genome Sequence of the Naphthalene Degrader Herbaspirillum sp. Strain RV1423

Genome Announcement, 2 (2)

Camarinha-Silva A., Wos-Oxley M.L., Jauregui R., Becker K., Pieper Dietmar H. (2012)

Validating T-RFLP as a sensitive and high-throughput approach to assess bacterial diversity patterns in human anterior nares

Fems Microbiology Ecology, 79 (1)

de Lima-Morales D., Chaves-Moreno D., Jarek M., Vilchez-Vargas R., Jauregui R., Pieper D.H. (2013)

Draft Genome Sequence of Pseudomonas veronii Strain 1YdBTEX2

Genome Announcement, 1 (3)

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Herbst F.A., Bahr A., Duarte M., Pieper D.H., Richnow H.H., von Bergen M., ... , Seifert J., Bombach P. (2013)

Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP)

Proteomics, 13 (18-19)

Alcaide M., Tornes J., Stogios P.J., Xu X., Gertler C., Di Leo R., Bargiela R., Lafraya A., Guazzaroni M.E., Lopez-Cortes N., Chernikova T.N., Golyshina O.V., Nechitaylo T.Y., Plumeier Iris, Pieper Dietmar H., Yakimov M.M., Savchenko A., ... , Golyshin P.N., Ferrer M. (2013)

Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the a[alpha]/b[beta] hydrolase family

Biochemical Journal, 454 (1)

DOI: 10.1042/BJ20130552 PubMed

Oosterkamp M.J., Veuskens T., Talarico Saia F., Weelink S.A.B., Goodwin L.A., Daligault H.E., Bruce D.C., Detter J.C., Tapia R., Han C.S., Land M.L., Hauser L.J., Langenhoff A.A.M., Gerritse J., van Berkel W.J.H., Pieper Dietmar H., Junca H., Smidt H., Schraa G., Davids M., Schaap P.J., ... , Plugge C.M., Stams A.J.M. (2013)

Genome Analysis and Physiological Comparison of Alicycliphilus denitrificans Strains BC and K601T

PLoS ONE, 8 (6)

Vilchez-Vargas Ramiro, Geffers Robert, Suarez-Diez Maria, Conte Ianina, Waliczek Agnes, Kaser Vanessa S., Kralova M., ... , Junca H., Pieper Dietmar H. (2013)

Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system

Environmental Microbiology, 15 (4)

DOI: 10.1126/scitranslmed.3009925 HZI-Repositorium PubMed

de Lorenzo V, Pieper Dietmar*, Ramos J.L. (2013)

From the test tube to the environment - and back

Environmental Microbiology, 15 (1)

DOI: 10.1111/j.1462-2920.2012.02896.x HZI-Repositorium PubMed

Schmidt E., Mandt C., Janssen D.B., Pieper Dietmar H.*, Reineke W. (2013)

Degradation of chloroaromatics: structure and catalytic activities of wild-type chlorocatechol 2,3-dioxygenases and modified ones

Environmental Microbiology, 15 (1)

DOI: 10.1111/j.1462-2920.2012.02831.x

Guazzaroni M.E., Herbst F.A., Lores I., Tamames J., Pelaez A.I., Lopez-Cortes N., Alcaide M., Del Pozo M.V., Vieites J.M., von Bergen M., Gallego J.L., Bargiela R., Lopez-Lopez A., Pieper Dietmar H.*, Rossello-Mora R., Sanchez J., ... , Seifert J., Ferrer M. (2013)

Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation

ISME Journal, 7 (1)

DOI: 10.1038/ismej.2012.82 HZI-Repositorium PubMed

Marin M., Plumeier I., Pieper Dietmar H.* (2012)

Degradation of 2,3-dihydroxybenzoate by a novel meta-cleavage pathway

Journal of Bacteriology, 194 (15)

DOI: 10.1128/JB.00430-12 HZI-Repositorium PubMed

Wos-Oxley M., Bleich A., Oxley A.P., Kahl S., Janus L., Smoczek A., Nahrstedt H., Pils M., Taudien S., Platzer M., Hedrich H.J., ... , Medina Eva*, Pieper Dietmar* (2012)

Comparative evaluation of establishing a human gut microbial community within rodent models

Gut Microbes, 3 (3)

Perez-Pantoja D., Donoso R., Agullo L., Cordova M., Seeger M., ... , Pieper Dietmar H.*, Gonzalez B. (2012)

Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales

Environmental Microbiology, 14 (5)

DOI: 10.1111/j.1462-2920.2011.02613.x HZI-Repositorium PubMed

Buchler G., Wos-Oxley M.L., Smoczek A., Zschemisch N.H., Neumann D., Pieper Dietmar H.*, ... , Hedrich H.J., Bleich A. (2012)

Strain-specific colitis susceptibility in IL10-deficient mice depends on complex gut microbiota-host interactions

Inflammatory Bowel Diseases, 18 (5)

Camarinha-Silva A., Jáuregui R., Pieper Dietmar H.*, Wos-Oxley M.L. (2012)

The temporal dynamics of bacterial communities across human anterior nares

Environmental Microbiology Reports, 4 (1)

Duarte M., Ferreira-da-Silva F., Lünsdorf H., Junca H., Gales L., ... , Pieper D.H., Nunes O.C. (2011)

Gulosibacter molinativorax ON4T molinate hydrolase, a novel cobalt-dependent amidohydrolase

Journal of Bacteriology, 193 (20)

DOI: 10.1128/JB.05054-11 HZI-Repositorium PubMed

Oosterkamp M.J., Veuskens T., Plugge C.M., Langenhoff A.A., Gerritse J., van Berkel W.J., Pieper Dietmar H.*, Junca H., Goodwin L.A., Daligault H.E., Bruce D.C., Detter J.C., Tapia R., Han C.S., Land M.L., Hauser L.J., ... , Smidt H., Stams A.J. (2011)

Genome sequences of Alicycliphilus denitrificans strains BC and K601T

Journal of Bacteriology, 193 (18)

DOI: 10.1128/JB.00365-11 HZI-Repositorium PubMed

Pfingsten-Würzburg S., Pieper Dietmar*, Bautsch W., Probst-Kepper M. (2011)

Prevalence and molecular epidemiology of meticillin-resistant Staphylococcus aureus in nursing home residents in northern Germeny

Journal of Hospital Infection, 78 (2)

Becker K., Mutter W., Daniel R., Rudack C., Peschel A., Pieper Dietmar* (2011)

Bakterielle Untermieter in der menschlichen Nase

GenomXPress

Junca H., Pieper Dietmar H.* (2009)

Functional marker gene assays for hydrocarbon degrading microbial communities - aerobic

(73, Experimental Protocols and Appendices, Oils and Lipids)

Perez-Pantoja D., Gonzalez B., Pieper Dietmar H.* (2009)

Phylogenomics of aerobic bacterial degradation of aromatics

(39, Microbiology of Utilization of Hydrocarbons)

Palleroni N., Pieper Dietmar H.* (2009)

Microbiology of hydrocarbon-degrading Pseudomonas

(63, Microbiology of Utilization of Hydrocarbons, Oils and Lipids)

Seeger M., Pieper Dietmar H.* (2009)

Genetics of biphenyl biodegradation and co-metabolism of PCBs

(26, Microbiology of Utilization of Hydrocarbons, Oils and Lipids)

Pieper Dietmar H.*, Gonzalez B., Camara B., Perez-Pantoja D., Reineke W. (2009)

Aerobic degradation of chloroaromatics

(5, Microbiology of Utilization of Hydrocarbons, Oil and Lipids)

Perez-Pantoja D., Gonzalez B., Pieper Dietmar H.* (2009)

Aerobic degradation of aromatic hydrocarbons

(4, Microbiology of Utilization of Hydrocarbons, Oil and Lipids)

Vilchez-Vargas R., Junca H., Pieper Dietmar H.* (2010)

Metabolic networks, microbial ecology and 'omics' technologies: towards understanding in situ biodegradation processes

Environental Microbiology, 12 (12)

Gomes N.C., Flocco C.G., Costa R., Junca H., Vilchez R., Pieper Dietmar H.*, Krogerrecklenfort E., Paranhos R., ... , Mendonca-Hagler L.C., Smalla K. (2010)

Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia

Fems Microbiology Ecology, 74 (2)

Wos-Oxley M.L., Plumeier I., von Eiff C., Taudien S., Platzer M., Vilchez-Vargas R., ... , Becker K., Pieper Dietmar H.* (2010)

A poke into the diversity and associations within human anterior nare microbial communities

ISME Journal, 4 (7)

Marin M., Perez-Pantoja D., Donoso R., Wray Victor*, Gonzalez B., Pieper Dietmar H.* (2010)

Modified 3-oxoadipate pathway for the biodegradation of methylaromatics in Pseudomonas reinekei MT1

Journal of Bacteriology, 192 (6)

DOI: 10.1128/JB.01208-09 HZI-Repositorium PubMed

Kunze M., Zerlin K.F., Retzlaff A., Pohl J.O., Schmidt E., Janssen D.B., Vilchez-Vargas R., ... , Pieper Dietmar H.*, Reineke W. (2009)

Degradation of chloroaromatics by Pseudomonas putida GJ31: assembled route for chlorobenzene degradation encoded by clusters on plasmid pKW1 and the chromosome

Microbiology, 155 (Pt 12)

DOI: 10.1099/mic.0.032110-0 PubMed

Marin M., Heinz Dirk W.*, Pieper Dietmar H.*, Klink B.U. (2009)

Crystal structure and catalytic mechanism of 4-methylmuconolactone methylisomerase

Journal of Biological Chemistry, 284 (47)

Marin M., Pieper Dietmar H.* (2009)

Novel metal-binding site of Pseudomonas reinekei

Biochemical and Biophysical Research Communications, 390 (4)

DOI: 10.1016/j.bbrc.2009.10.151 HZI-Repositorium PubMed

Scheithauer B.K., Wos-Oxley M.L., Ferslev B., Jablonowski H., Pieper Dietmar H.* (2009)

Characterization of the complex bacterial communities colonizing biliary stents reveals a host-dependent diversity

ISME Journal, 3 (7)

Brennerova M.V., Josefiova J., Brenner V., Pieper D.H., Junca H. (2009)

Metagenomics reveals diversity and abundance of meta-cleavage pathways in microbial communities from soil highly contaminated with jet fuel under air sparging bioremediation

Environental Microbiology, 11 (9)

DOI: 10.1111/j.1462-2920.2009.01943.x HZI-Repositorium PubMed

Camara B., Nikodem P., Bielecki P., Bobadilla R., Junca H., Pieper Dietmar.H.* (2009)

Characterization of a gene cluster involved in 4-chlorocatechol degradation by Pseudomonas reinekei MT1

Journal of Bacteriology, 191 (15)

Kabelitz N., Machackova J., Imfeld G., Brennerova M., Pieper Dietmar H.*, ... , Heipieper H.J., Junca H. (2009)

Enhancement of the microbial community biomass and diversity during air sparging bioremediation of a soil highly contaminated with kerosene and BTEX

Applied Microbiology and Biotechnology, 82 (3)

Gross R., Guzmán C.A., Sebaihia M., Martins dos Santos Vitor A.P.M.*, Pieper Dietmar H.*, Koebnik R., Lechner M., Bartels D., Buhrmester J., Choudhuri J.V., Ebensen T., Gaigalat L., Herrmann S., Khachane A.N., Larisch C., Link S., Linke B., Meyer F., Mormann S., Nakunst D., Ruckert C., Schneiker-Bekel S., Schulze K., Vorholter F.J., Yevsa T., Engle J.T., Goldman W.E., Puhler A., Gobel U.B., Goesmann A., Blöcker Helmut*, ... , Kaiser O., Martinez-Arias R. (2008)

The missing link: Bordetella petrii

BMC GENOMICS, 9

DOI: 10.1186/1471-2164-9-449 HZI-Repositorium PubMed

Camara B., Marin M., Schlomann M., Hecht Hans-Jürgen*, Junca H., Pieper Dietmar H.* (2008)

trans-Dienelactone hydrolase from Pseudomonas reinekei

Biochemical and Biophysical Research Communications, 376 (2)

Perez-Pantoja D., De la I, Pieper Dietmar H.*, Gonzalez B. (2008)

Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134

Fems Microbiology Reviews, 32 (5)

Pieper Dietmar H.*, Seeger M. (2008)

Bacterial metabolism of polychlorinated biphenyls

Journal of Molecular Microbiology and Biotechnology, 15 (2-3)

Aly H.A., Huu N.B., Wray Victor*, Junca H., Pieper DietmarH.* (2008)

Two angular dioxygenases contribute to the metabolic versatility of dibenzofuran-degrading Rhodococcus sp. strain HA01

Applied in Environmental Microbiology, 74 (12)

Halak S., Basta T., Bürger S., Contzen M., Wray Victor*, ... , Pieper Dietmar H.*, Stolz A. (2007)

4-Sulfomuconolactone hydrolases from Hydrogenophaga intermedia S1

Journal of Bacteriology, 189 (19)

DOI: 10.1128/JB.00611-07 HZI-Repositorium PubMed

Kalogerakis N., Pieper Dietmar H.* (2007)

In situ bioremedation

European Journal of Soil Biology, 43 (5-6)

Camara B., Strömpl Carsten*, Verbarg S., Sproeer C., Pieper Dietmar H.*, Tindall B.J. (2007)

Pseudomonas reinekei sp. nov.,

International Journal of Systematic and Evolutionary Microbiology, 57 (5)

Witzig Robert*, Aly H.A.H., Strömpl Carsten*, Wray Victor*, Junca Howard*, Pieper Dietmar H.* (2007)

Molecular detection and diversity of novel diterpenoid dioxygenase DitA1 genes from proteobacterial strains and soil samples

Environmental Microbiology, 9 (5)

Camara B., Bielecki P., Kaminski F., Martins dos Santos Vitor A.P.*, Plumeier I., ... , Nikodem P., Pieper Dietmar H.* (2007)

A gene cluster involved in degradation of substituted salicylates via ortho cleavage in Pseudomonas sp. strain MT1 encodes enzymes specifically adapted for transformation of 4-methylcatechol and 3-methylmuconate

Journal of Bacteriology, 189 (5)

Witzig Robert*, Junca Howard*, Hecht Hans-Jürgen*, Pieper Dietmar H.* (2006)

Assessment of Toluene/Biphenyl Dioxygenase Gene Diversity in Benzene-Polluted Soils: Links between Benzene Biodegradation and Genes Similar to Those Encoding Isopropylbenzene Dioxygenases†

Applied and Environmental Microbiology, 72

DOI: 10.1128/AEM.72.5.3504-3514.2006 HZI-Repositorium PubMed

El Fantroussi S., Agathos S.N., Pieper Dietmar H.*, Witzig Robert*, Cámara B., Gabriel-Jürgens L., Junca Howard*, Zanaroli G., Fava F., Pérez-Jiménez J.R., Young L.Y., Hamonts K., Lookman R., Maesen M., Diels L., Dejonghe W., ... , Dijk J., Springael D. (2006)

Biological Assessment and Remediation of Contaminated Sediments

Reineke W., Kaschabek S.R., Pieper D.H. (2006)

Chlorinated hydrocarbon metabolism

DOI: 10.1002/9780470015902.a0000472.pub4

Ledger T., Pieper Dietmar H.*, González B. (2006)

Chlorophenol hydroxylases encoded by plasmid pJP4 differentially contribute to chlorophenoxyacetic acid degradation

Applied and Environmental Microbiology, 72 (4)

DOI: 10.1128/AEM.72.4.2783-2792.2006 HZI-Repositorium

Hendrickx B., Junca H., Vosahlova J., Lindner A., Ruegg I., Bucheli-Witschel M., Faber F., Egli T., Mau M., Schlomann M., Brennerova M., Brenner V., Pieper Dietmar H.*, Top E.M., Dejonghe W., ... , Bastiaens L., Springael D. (2006)

Alternative primer sets for PCR detection of genotypes involved in bacterial aerobic BTEX degradation: Distribution of the genes in BTEX degrading isolates and in subsurface soils of a BTEX contaminated industrial site

Journal of Microbiological Methods, 64 (2)

Junca H., Witzig R., Pieper Dietmar (2005)

In situ detection of functional genes for aerobic aromatic degradation

Moore E.R.B., Tindall B.J., Martins dos Santos V.A.P.*, Pieper Dietmar* (2005)

Pseudomonas : Non-medical

Proceedings of the National Academy of Sciences of the United States of America, 3rd

Junca H., Pieper D.H. (2005)

Diagnosing the biodegradation potential of soils, Trends in soil and sediment

Reineke W., Pieper D.H. (2005)

Evolution of degradative pathways for chloroaromatic compounds

Pieper D.H. (2005)

Aerobic degradation of polychlorinated biphenyls

Applied Microbiology and Biotechnology, 67

Pollmann K., Wray V., Pieper D.H. (2005)

Chloromethylmuconolactones as critical metabolites in the degradation of chloromethylcatechols: On the recalcitrance of 2-chlorotoluene

Journal of Bacteriology, 187

Katsivela E., Moore E., Maroukli D., Strömpl C., Pieper D.H., Kalogerakis N. (2005)

Bacterial community dynamics during in-situ bioremediation of petroleum waste sludge in landfarming sites

Biodegradation, 16 (2)

Junca H., Plumeier I., Hecht H.J., Pieper D.H. (2004)

Difference in kinetic behavior of catechol 2,3-dioxygenase variants from a polluted environment

Microbiology <Reading>, 150

Pieper D.H., Reineke W. (2004)

Degradation of chloroaromatics by Pseudomona(d)s

Göbel M., Kranz O.H., Kaschabek S.R., Schmidt E., Pieper D.H., Reineke W. (2004)

Microorganisms degrading chlorobenzene via ameta-cleavage pathway harbor highly similar chlorocatechol-2,3-dioxygenase-encoding gene clusters

Archives of Microbiology, 182

Pieper D.H., Martins dos Santos V.A.P., Golyshin P.N. (2004)

Genomic and mechanistic insights into the biodegradation of organic pollutants

Current Opinion in Biotechnology, 15

Junca H., Pieper D.H. (2004)

Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries

Environmental Microbiology, 6

HZI-Repositorium PubMed

Pollmann K., Wray V., Hecht H.-J., Pieper D.H. (2003)

Rational engineering of the regioselectivity of TecA tetrachlorobenzene dioxygenase for the transformation of chlorinated toluces

Microbiology <Reading>, 149

McKay D., Prucha W., Reineke K., Timmis K.N., Pieper D.H. (2003)

Substrate specificity and expression of three 2,3-dihydroxybiphenyl 1,2dioxygenases from Rhodococcus globerulus strain P6.

Journal of Bacteriology, 185

DOI: 10.1128/JB.185.9.2944-2951.2003 HZI-Repositorium PubMed

Perez-Pantoja D.T., Ledger D., Pieper D., Gonzalez B. (2003)

Efficient turnover of chlorocatechols is essential for growth of Ralstonia eutropha JMP134(pJP4) in 3-chlorobenzoic acid.

Journal of Bacteriology, 185

Bertini I., Provenzani A., Viezzoli M.S., Pieper D.H., Timmis K.N. (2003)

NMR spectroscopy as a tool to investigate the degradation of aromatic compounds by a Pseudomonas putida strain

Magnetic Resonance Chemistry, 41

DOI: 10.1002/mrc.1216

Demnerova K., Stiborova H., Leigh M.B., Pieper D.H., Pazlarova J., ... , Brenner V., Macek T. (2003)

Bacteria degrading PCBs and CBs isolated from long-term PCB contaminated soil

Water, Air and Soil Pollution:Focus, 3

Barreiros L., Nogales B., Manaia C.M., Ferreira A.C.S., Pieper D.H., ... , Reis A.M., Nunes O.C. (2003)

A novel pathway for mineralization of the thiocarbamate herbicide molinate by a defined bacterial consortium

Environmental Microbiology, 5

DOI: 10.1046/j.1462-2920.2003.00492.x PubMed

Junca H., Pieper D.H. (2003)

Amplified functional DNA restriction analysis to determine catechol 2,3 dioxygenase gene diversity in soil bacteria

Journal of Microbiological Methods, 55

Nikodem P., Hecht V., Schlömann M., Pieper D.H. (2003)

A new bacterial pathway for 4- and 5-chlorosalicylate degradation via 4-chlorocatechol and maleylacetate in Pseudomonas sp. strain MT1

Journal of Bacteriology, 185

Trefault N., Clement P., Manzano M., Pieper D.H., Gonzalez B. (2002)

The copy number of the catabolic plasmid pJP4 affects growth of Ralstonia eutropha JMP134 (pJP4) on 3-chlorobenzoate

Fems Microbiology Letters, 212 (1)

Skiba A., Hecht V., Pieper D.H. (2002)

Formation of protoanemonin from 2-chlorocis, cis-muconate by the combined action of muconate cycloisomerase and muconolactone isomerase.

Journal of Bacteriology, 184

Pollmann K., Kaschabek S., Wray V., Reineke W., Pieper D.H. (2002)

Metabolism of dichloromethylcatechols as central intermediates in the degradation of dichlorotoluenes by Ralstonia ap. strain PS12

Journal of Bacteriology, 184

Plumeier I., Perez-Pantoja D., Heim S., Gonzalez B., Pieper D.H. (2002)

Importance of different tfd genes for degradation of chloroaromatics by Ralstonia eutropha JMP134

Journal of Bacteriology, 184 (15)

Pieper D.H., Pollmann K., Nikodem P., Gonzalez B., Wray V. (2002)

Monitoring keyreactions in degradation of chloroaromatics by in situ H-1 nuclear magnetic resonance: Solution structures of metabolites formed from cis-Dienelactone

Journal of Bacteriology, 184 (5)

Ledger T., Pieper D.H., Pérez-Pantoja D., González B. (2002)

Novel insights into interplay between xyl genes-encoded peripheral reactions and tfd genes-encoded chlorocatechol pathway for degradation of chlorobenzoates by Ralstonia eutropha JMP 134

Microbiology <Reading>, 148

Abraham W.-R., Nogales B., Golyshin P.N., Pieper D.H., Timmis K.N. (2002)

Polychlorinated biphenyl-degrading microbial communities in soils and sediments

Current Opinion in Microbiology, 5 (3)

Pollmann K., Beil S., Pieper D.H. (2001)

Transformation of chlorinated benzenes and toluenes by Ralstonia sp. strain PS12 tecA (tetrachlorobenzene dioxygenase) and tecB (chlorobenzene dihydrodiol dehydrogenase) gene products

Applied and Environmental Microbiology, 67 (9)

Clement P., Pieper D.H., Gonzalez B. (2001)

Molecular characterization of a deletion/duplication rearrangement in tfd genes from Ralstonia eutropha JMP134(pJP4) that improves growth on 3-chlorobenzoic acid but abolishes growth on 2,4-dichlorophenoxyacetic acid

Microbiology <Reading>, 147 (Pt 8)

HZI-Repositorium PubMed

Reineke W., Pieper D.H., Schlömann M. (2000)

Mikrobieller Abbau von Chloraromaten

Bioforum (1-2)

Klemba M., Jakobs B., Wittich R.M., Pieper D. (2000)

Chromosomal integration of Tcb chlorocatechol degradation pathway genes as a means of expanding the growth substrate range of bacteria to include haloaromatics

Applied and Environmental Microbiology, 66 (8)

Perez-Pantoja D., Guzmán L., Manzano M., Pieper D.H., Gonzalez B. (2000)

Role of tfdC(I)D(I)E(I)F(I) and tfdD(II)C(II)E(II)F(II) gene modules in catabolism of 3-chlorobenzoate by Ralstonia eutropha JMP134(pJP4)

Applied and Environmental Microbiology, 66 (4)

Pieper D.H., Reineke W. (2000)

Engineering bacteria for bioremediation

Current Opinion in Biotechnology, 11 (3)

Rosenbrock P., Langner S., Abraham W.-R., Pieper D. (2000)

Vergleichende Untersuchungen des Chloraromatenabbaus im Bitterfelder Grundwasser durch Spezialkulturen und die autochthone Mikroflora

DOI: - HZI-Repositorium PubMed

Prof. Dr. Dietmar Pieper

Forschungsgruppe

Standort